PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000543G0370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 213aa    MW: 22927.5 Da    PI: 5.694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000543G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171262155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  PH01000543G0370 12 KKYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDDPEKAARAFDAAFVCLRG 62
                     59*****998.**********933...5*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-241275No hitNo description
SMARTSM003801.0E-281379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-251374IPR001471AP2/ERF domain
PROSITE profilePS5103221.3911373IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-181366IPR016177DNA-binding domain
PfamPF008473.2E-91360IPR001471AP2/ERF domain
PRINTSPR003671.1E-81425IPR001471AP2/ERF domain
PRINTSPR003671.1E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEGGSGGSRG SKKYKGVRRR KWGKWVSEIR LPNSRERIWL GSYDDPEKAA RAFDAAFVCL  60
RGRGAAGADL NLPNSPPPCS GRGRSSDPQE VQAAALSHAN RAPVTAQEAP AALMDVDSPA  120
TLSKEFVTHD MDVDVFGSSE VVAPAVRADG SIDWRPVMAH PPPLFSPTCW CSSAYDFLQL  180
PPPPGDEDME ESSHGASASL WSFDSRDSCF RY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042574e-32AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149584e-32AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-32CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680656.12e-88PREDICTED: dehydration-responsive element-binding protein 1G-like
SwissprotQ84QC21e-36ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0K5Z17e-97A0A0E0K5Z1_ORYPU; Uncharacterized protein
STRINGGRMZM2G097081_P015e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-22ERF family protein